Honda's clutch creak is infamous from the early 2000 when they switched to hydraulic clutches.
There are TWO separate problems that people complain about, and they are very similar in sound/feel to the owner.
Clutch CLICKING. Distinct, crisp CLICK sound at bottom of pedal travel. Also might...
For the Clutch Master Cylinder click/squeak. Once your warranty goes out, you can use this DIY to fix it. Spray"White Lithium Grease" on the CMC.
Have to do this to my 2006 TSX and 2008 Acura TLS.
The 2013 Acura ILX had the infamous brake squeal. Took Honda a couple of years to have them put a TSB. The fix was to replace the rotors but for your issue. Maybe the pads might be able to fix your issue, if not then it might be the rotors.